Fics like Prodigal Sons

“Welcome home, my sons, and—” Splinter's whiskers perk forward abruptly as two more purple-masked heads emerge from the water. “—my sons?” “Long story,” Donnie says, shaking some of the water from his boots. “Short version goes something like this: mysterious bad guys, creepy abandoned warehouse, experiments with alien technology, portals to other dimensions, encounters with alternate selves, alternate selves in mortal peril, yada yada yada, alternate selves pulled into home dimension in Hail Mary pass to keep matrix of known multiverse from collapsing, unfortunate twist of circumstance trapping said alternate selves here for the time being.” “Plus,” Mikey adds, “these dudes were getting the short end of the ninja stick from our douchebag alternate selves, and we really, really thought they’d be better off with us.”

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