Fics like Everything is Different Now

The day after Jess meets Rory Gilmore, he wakes up to find that everyone in his life thinks that he is, and always has been, a girl - not accounting for the minor fact that suddenly, she's become one. Everyone, that is, except Rory. Or, the Soulmate AU where members of the Danes family change sex and gender to match their soulmate's preferences once they touch for the first time, and Rory is a clueless baby lesbian. Chapter Two features Luke and Lorelai's story with transmasc Luke!

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9. what are you afraid of, making it better? by dollsome (Gilmore Girls)
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11. Full Circle by Galya (Gilmore Girls, A year in the life - Fandom)
12. Kingdom by flotationdevice (Gilmore Girls)
13. As You Wish by Ultra (Gilmore Girls)
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16. doors unlocked and open by missgoalie75 (Gilmore Girls)
17. maybe you and i (should get together) by svgurl410 (Gilmore Girls)
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19. 49% by queer_we_are (Gilmore Girls)
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